BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB026D12SP1|AL428550
(830 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig988 970 0.0
3x_Contig1745 453 e-127
>3x_Contig988
Length = 2280
Score = 970 bits (480), Expect = 0.0
Identities = 515/536 (96%)
Strand = Plus / Plus
Query: 1 gatcattaatgatccaattgcaccaaggtatattggccagtgacatgcgatactacatgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1734 gatcattaatgatccaattgcaccaaggtatattggccagtgacatgcgatactacatgt 1793
Query: 61 attttgaaaaggaattgaaaacaaacattctagcattttttccagtttggtcttgagacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1794 attttgaaaaggaattgaaaacaaacattctagcattttttccagtttggtcttgagacc 1853
Query: 121 aatcttatctaaaggctttcctaagaaaaagagctcgagataaagattaagtgcataatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1854 aatcttatctaaaggctttcctaagaaaaagagctcgagataaagattaagtgcataatg 1913
Query: 181 atacattctggtacagttcttcattgataatctcaatctaatatcgcatagtccggtagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1914 atacattctggtacagttcttcattgataatctcaatctaatatcgcatagtccggtagt 1973
Query: 241 agcttgatcgatatactcgtcatcaatacgaatattttcmagcattttthaggtgctatc 300
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 1974 agcttgatcgatatactcgtcatcaatacgaatattttcaagcatttttaaggtgctatc 2033
Query: 301 tcccatgtccttgaagctctttatcacagctgggtcactttcagtwaaatwtgatctgag 360
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 2034 tcccatgtccttgaagctctttatcacagctgggtcactttcagtaaaatatgatctgag 2093
Query: 361 catgttagtgccagaacaatccttacctcttttcttttwwttcwwwagahaacttgayag 420
||||||||||||||||||||||||||||||||||||| ||| ||| ||||||| ||
Sbjct: 2094 catgttagtgccagaacaatccttacctcttttctttaaattcaaaagaaaacttgaaag 2153
Query: 421 cttggtgaatwtggggtagttatcygtggtatatcctcttagahggtccattcgtgagtt 480
|||||||||| ||||||||| ||| |||||||||||||| ||| ||||||||||||||||
Sbjct: 2154 cttggtgaatatggggtagtaatcagtggtatatcctctaagaaggtccattcgtgagtt 2213
Query: 481 twgaagattwatcttcgagttagtcgcattgttgagaagatcttcaaggtcctcct 536
| ||||||| | |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2214 tagaagattaaacttcgagtaagtcgcattgttgagaagatcttcaaggtcctcct 2269
>3x_Contig1745
Length = 19830
Score = 453 bits (224), Expect = e-127
Identities = 250/262 (95%)
Strand = Plus / Minus
Query: 569 atccaagctaacacctctgcmtggcagaaccaatcttttacaaaaaggtaacagtcatgg 628
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 19827 atccaagctaacacctctgcatggcagaaccaatcttttacaaaaaggtaacagtcatgg 19768
Query: 629 gcaagttcttcgatattwtcttggttgatctccgcagccttcaatttttctactctcata 688
||||||| ||||||||| | ||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 19767 gcaagttattcgatattattttggttgatctccgcaggcttcaatttttttactctcata 19708
Query: 689 aacaaatcatgcacacctctaagatgtgttctccagtcagamctttttmttgayctattt 748
||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||
Sbjct: 19707 aacaaatcatgcacacctctaagatgtgttctccagtcagaacttttttttgaactattt 19648
Query: 749 gcagcaaaaagcacagtwaccgtgaaggtaagcsctatattaccgcaataatcattcgac 808
||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 19647 gcagcaaaaagcacagttaccgtgaaggtaagcgatatattaccgcaataatcattcgac 19588
Query: 809 ttccttattagagatgtcaact 830
||||||||||||||||||||||
Sbjct: 19587 ttccttattagagatgtcaact 19566
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.40 0.714 1.33
Gapped
Lambda K H
1.40 0.714 1.33
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4979
Number of Sequences: 1807
Number of extensions: 4979
Number of successful extensions: 115
Number of sequences better than 1.0e-20: 2
length of query: 830
length of database: 10,358,551
effective HSP length: 16
effective length of query: 814
effective length of database: 10,329,639
effective search space: 8408326146
effective search space used: 8408326146
T: 0
A: 40
X1: 5 (10.1 bits)
X2: 14 (28.3 bits)
S1: 12 (24.7 bits)
S2: 49 (99.5 bits)